PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G061700.1
Common NamePOPTR_0011s06010g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 270aa    MW: 30073 Da    PI: 10.238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G061700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18148198255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd +    r  +r++lg+f tae Aa a+++a+ +++g
  Potri.011G061700.1 148 HYRGVRRRP-WGKYAAEIRDSK----RhgARIWLGTFETAEAAALAYDRAAFNMRG 198
                         8********.**********42....235*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-20147207No hitNo description
Gene3DG3DSA:3.30.730.107.6E-31147207IPR001471AP2/ERF domain
PfamPF008476.6E-14148198IPR001471AP2/ERF domain
SMARTSM003804.8E-36148212IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22148208IPR016177DNA-binding domain
PROSITE profilePS5103223.406148206IPR001471AP2/ERF domain
PRINTSPR003671.1E-10149160IPR001471AP2/ERF domain
PRINTSPR003671.1E-10172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTCYNRMSRQ KDDMNTIHWY SCAFSPCKIT GERYLPGANS SMPRAYKLKF KYKSRAPFCT  60
LQASSRNPKI PRNQLQPNPL PSNKQTMVLS SQIHELPFNE NDSQDMVIYQ MINEASAPNS  120
STYNILPRSQ INTSGMLQPA RTVIAKKHYR GVRRRPWGKY AAEIRDSKRH GARIWLGTFE  180
TAEAAALAYD RAAFNMRGSK ALLNFPAEVV AAISTQNCQP IFSSTRTSSK KAMDSCGSSS  240
TITIATSQSE SESSTSGESR RQGSDILEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-31147209163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169170.0AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377448.10.0hypothetical protein POPTR_0011s06010g
SwissprotO046811e-49PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLU5FVW80.0U5FVW8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06010.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-31ethylene response factor 1